"...the cray is certainly not a fish, but a handsome crustaceous animal" -John James Audubon
“For a gentleman should know something of invertebrate zoology, call it culture or what you will…”
– Martin Wells (1968) Lower Animals
"If you're so country then drink yourself to death."-Hangdogs

Monday, May 19, 2008

Coloring Books for Grad Students

Today is my son's birthday and one of his presents (found through Kevin's comic book posting - Johann says "Thanks Kevin!") is The Marine Biology Coloring Book. I hadn't seen this one before, and it is definitely not a run of the mill coloring book!

The illustrations are far more anatomically correct with wonderful details such as the reproductive cycle of sacculinid barnacle. The text that accompanies it is both explanatory and accessible. It is very specific and aimed generally at students or very serious beachcombers. While accessible to advanced middle school, high school, or early college students, some professors use the book as a quick orientation to marine biology for students coming to the marine biology graduate program from other fields.

The book starts with a general overview of oceanographic currents, weather, tides and proceeds into 14 page spreads covering major habitats including zonation concepts, the photic zone and a page spread each covering deep sea and hydrothermal vent habitats. Spreads on biological diversity and reproduction are organized taxonomically. Special topic pages follow on migrations, symbiosis, competition, defense, feeding strategies and oceanographic technology.

The book does a very good job covering the balance of verts to inverts despite the cover focus. After taking out the 17 page spreads on physical oceanography and habitats, there are 4 page spreads on plants and algae. Invertebrates are represented by 54 page spreads while fish, reptiles, birds and mammals by total 37 spreads. Some of those are overlap such as the spread "Symbiosis: Parasitism" which highlights three parasitic relationships: copepods parasitizing fish, fish parasitizing sea cucumbers and barnacles parasitizing crabs.

A Highly recommended book for junior marine biologists, or maybe for all the family members.

Friday, May 16, 2008

Vertebrates as "Good Indicators of Overall Biodiversity Trends"???????

WTF!!11! OMG11!!!eleven!! WTF!!!!111!!!!11! I DON'T THINK SO!?!?!?!!!??!one!!!!!!111!1!!!

Well, I don't have any offhand evidence for it, but I seriously doubt it. Especially in the ocean where vertebrates IMHO probably aren't the majority in ... oh I don't know... diversitybiomassabundanceandeverythingelse. CNN reports this quote paraphrasing the World Wildlife Fund (WWF) in an article today titled "Humans Blamed for Sharp Drop in Wildlife" (duh!).

The Living Planet Index measured 4,000 populations of 1,477 vertebrate species, which the WWF says is a good indicator of overall biodiversity trends.
OK, I understand its hard to get cuddly dollars from donors out of a jelly like you can a polar bear, but I really doubt vert "biodiversity trends", whatever that means, are indicative of the Living Planet. I don't have the time or patience to delve into the literature for this, so lets use a bit of the ole common sense.

Those containing backbones account for roughly 5% of animal diversity (by generous estimates), while those without said characteristic are embodied in THE OTHER 95% (ahem, *clears throat*). Of course the purpose of an indicator taxon in ecology is to be able to characterize and extrapolate the dynamics of a given genus or family to the whole community level. For instance, in agricultural landscapes one might use use carabid beetles to extrapolate to the rest of the insect community. This might be founded on an earlier study saying that carabid beetles made of 87% of the insect community. Therefore one may suppose that it is easier and cheaper to use beetles in the family Carabidae as an indicator for the community. Then you can perform experiments using this taxon to test ecological hypotheses and implement a monitoring program using carabids to make sure a protected parcel of land is be preserved, etc. etc. The key point is that for an indicator taxon to be useful it must be shown it represents the community or excompasses its diversity well enough.

Admittedly, I haven't read all of the WWF report 2010 and Beyond: Rising to the Biodiversity Challenge. But because of their select sampling, all they can say is that vertebrates (or 5% of animal diversity) is severely affected by "human demands on the biosphere". With their study design, you cannot extrapolate to all wildlife, unless by wildlife they mean cuddly little furballs and other relatives of our spined pets.

I do not disagree that human activities are responsible for accelerated biodiversity loss. It is a real phenomena as it has been directly observed and reported in many studies. But that is not what this study addresses and I remain unconvinced that marine vertebrates can indicate for deep sea sediment communities, cold-water corals, rocky intertidal, mudflat or any other ecosystem dominated by invertebrates.

Wednesday, May 14, 2008

Tangled Bank #105

The Beagle Project

The latest and greatest edition of The Tangled Bank is at the blog of my favorite marine project, The Beagle Project. Karen James and Peter McGrath collaborate yet again to bring a collection of biology and evolution related posts collected from submissions from the last two weeks. Actually, this version has something I haven't seen for a while, a discussion on abiogenesis, from Larry Moran.

More relevant to The Other 95% is a post at Science Made Cool, on parasitic anemone. The bastards, in their larval stage, steal food from ctenophores. (I would link to the post directly, but I really want our readers to go to The Beagle Project and read the entire Tangled Bank.)

And buy a T-Shirt from them while you are there.

Saturday, May 10, 2008

Zombie Squids of DOOM



Just trying to restore good graces after posting about pygmy gobis last week.

Friday, May 9, 2008

Great Barrier Reef Coloring Book

Dover Publications has the best deal on the net for coloring books! For $3.95 plus S&H you can get 32 pages of underwater reef pleasure! Who says the blue-ringed octopus (below) has to have blue rings? Why not lemon, or dirt brown (to signify where you will be buried should you touch it)? Stocked full with corals, nudibranchs, and oh yeah, those swimming vertebrate things that Mike the traitor likes, this coloring book will be sure to inspire your little ocean diver! Just look at the pretty coral on the cover. Its too bad those blobby orange stripey things are in the way.

Click image to view in original context.


Hat tip to Michael Barton, FCD.

Thursday, May 8, 2008

Carnival of the Blue #12

Carnival of the Blue is up over at the Island of Doubt. This is edition #12. Lots of great ocean themed posts!

Brittle Stars on Acid - A Really Bad Trip

ResearchBlogging.orgWhile there is some debate over which creature is the coolest, it is generally understood* that marine molluscs and echinoderms both will face severe stresses coping with increased ocean acidification due to increased CO2 concentrations. The shelled molluscs use calcium carbonate to build their shells and echinoderms use it in creating their exoskeleton. Calcification is strongly related to ocean pH levels and there have been numerous studies looking at the impacts of pH on calcification rates and metabolism in marine inverts.

Much of the published research has been focused on the molluscs and hermatypic (reef building) corals, which has shown that acidification (with levels predicted for the year 2100) will have detrimental effects on calcification and on the metabolic rates of the animals under study.


Image ©ScienceNOW
New research was published yesterday in the Proceedings of the Royal Society B on the effects of ocean acidification on the brittle star Amphiura filiformis and its arm regeneration. The researchers from Plymouth Marine Lab exposed A. filiformis to pH levels of 8.0 (control), 7.7 (IPCC predicted average ocean pH by 2100), 7.3 and 6.8 for a 40 day period. Regeneration effects were tested by detaching one leg from half the subjects and two legs from the rest in each pH group. The team found significant results for the length of regenerated arms, the calcium content and the metabolic rate caused by decreased pH levels.

Some of the results were surprising. Specifically, they found that the amount of calcium - which dissolves in acidic conditions - in regenerated arms was higher in acidified tests than in controls. They also found that non-regenerated arms maintained calcium levels in lower pH and even increased calcium content at a pH of 6.8. The researchers included a test of the calcium content of the separated arms as well. In acidified conditions the dead arms lost calcium as expected.

Brittle stars must increase calcification in the arms just to keep pace with the calcium disolution occuring due to pH. With regenerated arms having an even higher calcium content, this means A. filiformis must significantly increase the calcification under these conditions. The research found that the length of the regenerated arms was longer in acidified test conditions. All of this points to increased energy expenditure under acidified consitions in order to maintain calcium in extant arms and regenerate lost ones. This was confirmed by the oxygen uptake study, which found a significant increase in metabolic activity linked to incresed acidification.



Sounds pretty good then. A. filiformis can increase their metabolism and fuel an increaced calcification to cope with acidification. Except... the researchers also found that muscle wastage occurred and increased with greater acidification. It appears that the muscles are the fuel for the metabolism increase. The muscle wastage happened in regenerated and extant arms subjected to acidification at a rate of up to 20% muscle loss over 40 days. So they can regenerate faster and the calcium levels are higher, but the muscles are weaker and the net effect is a less capable arm. The trade offs to cope with acidification are killing them.

And why do we care?

These brittle stars are an echinoderm model for what may happen as the ocean becomes more acidic. The fact that they will be increasing their metabolism just to maintain calcium levels in their skeleton means greater stress and muscle loss, which in turn may mean less effective use of the arms which they use to burrow and feed. Keep in mind this was a short term experiment. The wastage seen in 40 days, while not fatal, could explain the mortality seen in experiments involving smaller pH changes over longer periods of time.

Burrowing brittle stars, such as A. filiformis, can be siginifcant ecosystem engineers in soft bottom areas through bioturbation and are a major food source (through nipped off arms) for a number of commercially important fish and crustaceans. Other echinoderms responsd in a similar way to acidification. This is a phylum that is, in many ecosystems, a key linkage in ecosystem dynamics and trophic webs so understanding how they react to environmental changes will be important to predict ecosystem changes.

The study also highlights the fact that acidfication affects different organisms in vastly different ways. The effects need to be examined on an organism level instead of only looking at processes. There is still a lot of research needed here, but right now it doesn't look good for the brittle stars, at least A. filiformis.

Wood, H.L., Spicer, J.I., Widdicombe, S. (2008). Ocean acidification may increase calcification rates, but at a cost. Proceedings of the Royal Society B: Biological Sciences, -1(-1), -1--1. DOI: 10.1098/rspb.2008.0343

Wednesday, May 7, 2008

Circus of the Spineless: Key to the Fauna of the Blogosphere

The 32nd edition of the Circus of the Spineless is up at Deep Sea News! Go there and work your way through the Dichotomous Key to the Fauna of the Blogosphere. Some excellent posts without backbone, like always!

Saturday, May 3, 2008

Conch Farming

Rick MacPherson is in Turks & Caicos for a meeting and is urging us to Honk if we like Conch.

Oh, man, do I love conch!

When I lived in Honduras, I was fortunate enough to get out to Roatan every few weeks for diving, Garifuna music, good food, and relaxation. One of the best parts for me was the near daily serving of conch. Usually it was as conch salad, but I love them in fritters as well. Unfortunately, Honduras Queen Conch are still being heavily fished, even though their numbers have decline very sharply since tourism increased.


Three conch shells in the
mangroves.
Photo ©Eric Heupel
And Belize... During my recent trip to Belize at South Water Cay and Carrie Bow Cay, there were only a handful of live conch to be seen, but hundreds of empty shells. Most of the live individuals were 2-3 years old. This is very disconcerting for a species which doesn't reach full size until 4-5 years and can live for up to 40 years. The large number of empty shells were often occupied by damselfish (Stegastes spp., especially beaugregories, who use them as shelter and nesting grounds, the little buggers can be quite aggressive about it as well (a study of that aggression was one of the things we studied there)

Steve Palumbi has a nice Micro-Documentary movie about the
lifecycle of Conch at the Garthwait & Griffin Films MicroDoc website. Just found out that all the microdocs are now available on DVD through them. (They are also at Palumbi Lab at Stanford.)

If you love reefs, seagrass beds, and invertebrates, how can you not love the conch, a giant marine mollusk that helps keep macro algae under control? And they taste good. Oh, wait...except the whole CITES II listing and dangerously decreasing population, conservation...

Well, it looks like there are a few successful, complete life cycle conch ranching operations and Rick reports on the one in Turks & Caicos, Caicos Conch Farm, which appears to be doing a great job of helping wild conch populations, while continuing to provide a sustainable source of conch meat and shells.

A Dusky Damselfish
guarding its conch shell.
Photo ©Eric Heupel

Friday, May 2, 2008

Live Fast, Die........I Can't DO It!


Pygmy Gobies Outdo James Dean

All right, so they are vertebrates. (Please don't kick me off the blog, Kevin.) I just wanted to write something cool during Coral Week, and I just realized that it's already Friday. So, with a bottle of "Hazed and Infused" beer at my side, I am going to wander into the world of a coral denizen that has no time to spare.

In a sad display of rampant unoriginality, most of the popular articles I found on the pygmy goby were cleverly titled "Live Fast, Die Young..." So, when I was thinking of a title for this post I struggled to resist the urge to use the phrase. It isn't clever any more, so I just had to stop myself before I finished the title.

The little buggers don't last all that long, it's true. The maximum lifespan is 59 days. So, what have you accomplished in the last fifty nine days? Probably not nearly as much as a pygymy gobi who just died today of old age; satisfied and leaving many grandchildren. It was born and lived three weeks as a larvae in the open ocean. Then it found a coral reef and settled in and hid from predators.

Females lay three clutches of eggs during their lives, and the fathers guard the eggs furiously until they hatch to become larvae who float through the ocean until they, in turn find their coral home and repeat the cycle again and again and again.

The cool part of the saga of the pygmy goby is that their short life spans their status as favored foods for predators places heavy selective pressure on them. Yep, back to evolution. (We just can't get away from it, can we?.) The pygmy gobi caught the attention of Astrobiology Magazine in 2005, following the release of a study authored by Martial Depczynski and David Bellwood of James Cook University. Depcsynski and Bellwood determined the lifespan of Eviota sigillata in part by scanning rings in the tiny fishes' otoliths (ear stones.) They lay down a ring a day, every day; and the rings are discrete, much like tree rings.

Okay, so I asked myself why Astrobiology would be interested in E. sigillata. Well, here is why:

In a series of supplemental field studies, the researchers showed that many small reef fish may be under intense pressure from predators. Daily mortality rates of 2%-8% were common, indicating the severe biological time constraints and intense selective pressure that this community experiences.

Until a recent marine discovery, the dwarf goby was also the record holder as the world's smallest vertebrate (animal with a backbone).

These findings on the shortest-living vertebrate, along with recent discoveries on coral reefs of the smallest and earliest-maturing vertebrate species, are helping to broaden our understanding of the range of vertebrate life histories and the potential for reef fish to contribute to this area of research.

Coral-reef ecosystems represent exceptional biodiversity and environmental stability, and this recent research is beginning to unravel the possible reasons for the ability of these ecosystems to support extremes in vertebrate evolution.
It has been a grand Coral Week in the blogosphere, and we learned that coral are not important just for themselves but also for the diversity of vertebrates dependent on them.

Living fast, dying young. It's over-rated, but instructive.