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Showing posts with label Stable Isotopes. Show all posts
Showing posts with label Stable Isotopes. Show all posts

Saturday, November 17, 2007

Dissertation Blogging, Part 2: Seep Primary Production of POM

In preparation for my comprehensive examination in less than 2 weeks and because its International Dissertation Writing Month, I will be posting my thesis proposal as I madly try to finish it all in time over the next few days. Feel free to question, correct, nitpick, criticize (constructively, I'm in a fragile state right now!), comment, praise me and make suggestions for improvement. And yes, I'm freakin' out!!!!

Part 1: Introduction

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This chapter is completed and under internal review right now and will be submitted soon. Hence, I will not go into much detail about it right now, you'll have to wait till it gets published! Below is the abstract for the paper:
A Stable Isotope Bioassay for Seep Primary Production of Particulate Organic Matter

Hydrocarbon seeps provide a rich source of chemical energy in the aphotic, nutrient-poor deep-sea. Yet it is unclear how much chemosynthetic primary production enters the pool of particulate organic matter (POM) that can be utilized by suspension-feeding taxa. To address these questions, tissue stable carbon, nitrogen and sulfur isotope content was analyzed from suspension-feeding taxa at a hydrocarbon seep community dominated by the methanotrophic mussel, Bathymodiolus childressi, in the northern Gulf of Mexico. Two end-member stable isotope mixing models were used to determine the relative input of seep-derived POM to photosynthetic-derived POM that is assimilated into the tissues of the suspension-feeding community. Our results indicate that seeps play an active role in the production of POM, which is assimilated by suspension-feeders. Additionally, we constrain possible sources of nutrients to the POM pool.
OK, a little of the basics. A methane seep is an area where natural gas and oil diffuse from reservoirs below the sediment naturally. The seep I studied is called a brine pool. All you need to know if that a brine pool is weird, like an undersea lake of brine (see picture below). Salt concentrations ~120psu or about 4 times the salinity of seawater. The geologic history is complex, but has to do with a salt diapir from the depths of the sediment that recharges the brine pool. Particulate organic matter (POM) cold be anything with an organic origin but not currently alive; bacteria, dead piece of meat floating down from the surface, fish poop, mussel pseudofaeces, etc. This is filter-feeder food. Though passive predators, such as anemones, can phagocytose (engulf) these particles and take up dissolved inorganic carbon (DIC), this is a minor part of their diet. They are after all predators. I hypothesize that they are eating zooplankton hanging around the seeps. Unfortunately, no one has yet to study the zooplankton at the brine pool, so I do not know they exist there, but past experience shows me that where there is energy there is zooplankton! The zooplankton do feed from the POM pool. Hence passive predators are consumers of the POM indirectly. This is becuase stable isotope trophic fractionation for carbon, sulfur and nitrogen behave in a predictable manner (with some caveats). Meaning, "you are what you eat".

Brine Pool NR-1 "shoreline" composed of the methanotrophic mussel Bathymodiolus childressi with a syntactic foam marker visible. Density of mussels is ridiculously high (rope on marker is ~50cm). Photo copyright Ian MacDonald (TAMU).

I basically picked off filter-feeders (barnacles, sabellids, serpulids, sponge) and passive predators (anemones and hydroids) from foam markers at the brine pool, a few hundred km south of Louisiana. These markers had been down there since the early to late-mid 90s and recovered in 2004. Plenty of time to get fouled up! After torturing them a bit, I ground them up and sent them to get their isotopes analyzed. Previous authors have already determined the surface phytoplankton carbon and nitrogen stable isotope values right over our study site and the sulfur isotopes are known to generally be pretty similar from ocean basin to ocean basin (unlike carbon and nitrogen). These values became the photosynthetic end-member into the model. Another previous study by a member of our lab had determined the tissue stable isotope values of all 3 elements for B. childressi at the same location. These values became the methanotrophic end-member. Tissue stable isotopes from chemosynthetic (sulfide-oxidizing) clams and tubeworms were used as an input for thiotrophy. Thiotrophic input was deemed neglible because there were no standing stocks of thiotrophic organisms, though sulfide concentrations were elevated in the outer section of the gigantonormous bed of mussels and mats of sulfide oxidizer bacteria. I included it in my model for good measure and the model agrees with me.

If you plot the stable isotope values of carbon against nitrogen, a nice nearly-linear continuum between methanotrophy and photosynthesis is visible, suggesting mixing of sources in the POM pool. To make a long story short, the model results suggest that seeps play an active role in contributing to the pool of available POM, something close to a quarter. More later when its published!

Thursday, November 15, 2007

Dissertation Blogging, Part 1: Introduction

*This marks my 200th post. In preparation for comprehensive examination in less than 2 weeks and because its International Dissertation Writing Month, I will be posting my thesis proposal as I madly try to finish it all in time over the next few days. Feel free to question, correct, nitpick, criticize (constructively, I'm in a fragile state right now!), comment, praise me and make suggestions for improvement. And yes, I'm freakin' out!!!!
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Biodiversity of Chemosynthetic Communities at the Eastern-Lau Spreading Centre

Many communities persist due the presence of a foundation species. Dayton (1972) defined a foundation species as an large, influential species that has a positive effect on community inhabitants through modifying environmental parameters, species interactions and resource availability. It is hypothesized that foundation fauna can ameliorate abiotic stress by modifying the chemical and physical environment (Bruno et al. 2003). The refuge provided by the foundation species increases abundance, biomass and diversity of other associated species (Bruno & Bertness 2001). Many chemoautotrophic megafauna at hydrothermal vents are foundation fauna that live in environments with high concentrations of toxic chemicals, heavy metals, high temperatures and low oxygen concentrations. Chemoautotrophs may modify the physical and chemical habitat (Johnson et al. 1994, Shank et al. 1998) and provide structural heterogeneity (Govenar & Fisher 2007), making the local environment more amenable to less tolerant colonizers (Shank et al. 1998). My research aims to test hypotheses relating environmental stress to the species composition and diversity of chemosynthetic communities at the Eastern-Lau Spreading Center (ELSC). Additionally, I will investigate the trophic ecology and food web structure between communities associated with three chemoautotrophic foundation species.


This thesis work is part of a larger project investigating the geology, chemistry, microbiology and ecology of deep-sea hydrothermal vents at the ELSC. Back-arc basins are the result of a complex plate tectonics setting where two or more oceanic plates converge with one plate subducting beneath the other(s). The friction caused by the subducting plates’ movement melts the rock along the plate boundary causing a volcanic arc to form on the overlaying plate. On the backside of that arc, a spreading centre is created as a result of the extensional forces of the subduction. Where back-arc spreading occurs, the crust is thin and fragile (see figure below). Seawater seeps down into cracks and fissures and comes into contact with super-heated rock. The seawater is heated and rises, carrying reduced chemicals and heavy metals in solution, which exits the crust at the seafloor and precipitates out of solution creating hydrothermal vent chimneys. Bacteria have evolved metabolic pathways to utilize the energy from oxidizing some of these reduced chemicals such as sulfides and methane. Furthermore, several metazoans have evolved a symbiosis with these bacteria with the result being abundant communities surrounding many vents worldwide.


The hydrothermal vent ecosystem is based upon chemosynthetic primary production and offers an opportunity to empirically test various measures of the diversity-stress hypothesis. At the ELSC, 3 major chemoautotrophic foundation species occur in dense aggregations: the snails Alviniconcha hessleri and Ifremeria nautilei and the mussel Bathymodiolus brevior. Henry et al. (submitted) have found clear differences in the thresholds for maximum H2S and minimum O2 concentrations and maximum temperatures for the three foundation species. Podowski et al. (submitted) have found significant differences in situ of H2S, O2 and temperature measurements between each of these community types, supporting the hypothesis that each foundation species occupies a specific thermo-chemical microhabitat. Furthermore, they occupy a gradient of stress, similar to a “bull’s eye” pattern, with A. hessleri in the highest stress environment (high H2S, low O2, high temp.), B. brevior in lowest stress environment (low H2S, higher O2 and near ambient temp.) and I. nautilei occupying an intermediate position with overlap on both ends. This well-defined gradient allows me to test the relationship between species diversity and stress.

Bathymodiolus brevior (Mytilidae)

At vents, stress can be ameliorated by chemoautotrophic foundation species by removal of sulfide from the environment (Johnson et al. 1988, Johnson et al. 1994). Mussel beds in low vent flow at the Galapagos Rift Zone vents have been shown to diffuse venting laterally and removal experiments have shown that sulfide concentrations above the mussel bed are lower pre-removal (Johnson et al. 1994). Stress reduction, by way of vent flow diffusion and sulfide removal, should increase with biomass of the foundation species if facilitation were an important factor in structuring communities associated with a foundation species. I hypothesize that diversity should increase with foundation species biomass (greater stress reduction) to a point where the response curve asymptotes at the maximum local species diversity. If competitive exclusion played a role in structuring these communities, then according to theory diversity is predicted to be greatest at intermediate levels of stress (Bruno et al. 2003). Since I. nautilei inhabits an intermediate position in stress tolerance, I would expect to see its associated community have the highest mean diversity.

The ELSC is further characterized by two different substrate types: lava tends to exhibit more basaltic characteristics in the north and andesitic in the south. The physical and chemical properties of these lava types are subtly different, but may have implications for how the hydrothermal venting regime is distributed over space. Preliminary evidence suggests that andesite, a more pliable and porous lava type, diffuses venting laterally more than basalt. This has implications for the fauna living on each lava type. This observation leads to the prediction that communities on andesite hosted substrate will have higher biomass and greater diversity than communities on basalt hosted substrate. The effect of substrate may be confounded by lateral diffusion by beds of mussels, and presumably snails. Even so, the greater diffusivity of andesite may act synergistically the diffusive activity of the mussel and snail beds to increase the amount of habitat that can support their respective associated communities.

Ifremeria nautilei (Provannidae)

The communities associated with these foundation fauna are poorly documented and the biological literature for this area consists mainly of taxonomic descriptions and video observations. Rapid progress is being made in understanding the ELSC communities due to the 2005 and 2006 expeditions to the area. Podowski et al. (submitted) built upon the limitations imposed by the laboratory setting of Henry et al.’s (submitted) physiological work of the chemoautotrophic species by measuring in situ chemical concentrations and temperature measurements of communities as a whole. Though their findings were novel and furthered our understanding of these communities, but Podowski et al.’s work was limited to the 2-dimensional view of the surface of the communities. Thus, diversity was biased against smaller fauna and those that lived within the foundation species’ matrix and not at the surface. Inferences on abundance, biomass, diversity and trophic interactions to the communities as a whole are thus limited. In order to understand how the communities associated with chemoautotrophic foundation species are structured, I collected 36 quantitative whole-community samples nested within site, which is nested within substrate (basaltic or andesitic). Each community is based on collections of one of three chemoautotrophic foundation species, confirmed upon retrieval as dominants in terms of abundance and biomass. Mixed communities, defined arbitrarily as the dominant foundation species composing 75% or less of the total foundation species abundance or biomass, were collected a priori and discovered a posteriori upon retrieval. I recognize that sampling may be biased by collecting from sites where the research team concentrated most of their multidisciplinary studies and by collecting the communities observed to be best collected by our sampling device. Sampling is thus haphazard and not random.

Alviniconcha hessleri (Provannidae)

The hydrothermal vent food web is structured upon bacterially-derived chemoautotrophic primary production (Jannasch 1985). Bacteria may be free-living or in an endosymbiosis with a wide range invertebrates (Childress & Fisher 1992). There is evidence for the cycling of chemoautotrophic-derived nutrients through consumers at vents and exportation of these nutrients outside the vent system (Van Dover & Fry 1989, Fisher et al. 1994, Van Dover & Fry 1994, Bergquist et al. 2007). Tunnicliffe (1991) constructed the first general food web model of the vent ecosystem which was later expounded upon by Bergquist et al. (2007) for the Juan de Fuca vent ecosystem. Their models included 3 producer pools (subsurface bacteria, bacterial mats on the surface and symbiotic bacteria) and 4 consumer pools (grazers, scavengers/detrivores, suspension feeders, predators and endosymbiotic hosts) interacting through four trophic pathways. Bergquist et al. (2007) recognized the utility of investigating trophic structure in a quantitative community setting in order to compare those results to community characteristics, but their analyses were limited to only one community. In order to better understand the relationship between community characteristics and trophic structure, I will analyze stable isotopes of fauna from quantitative collections on both andesitic and basaltic substrates.

While identifying and enumerating species for the community ecology portion of my research, I became very interested in systematics. This is due to my own personal fascination with diversity and to the fact that many species remain undescribed. The ELSC fauna are taxonomically similar to fauna from other biogeographic provinces. One such example are species are shrimp in the family Alvinocarididae. They have so far been found only at gas/oil seeps and hydrothermal vents worldwide. I am describing, with a colleague from France, a new species of Alvinocaris from the ELSC that is morphologically most similar to A. lusca from the Galapagos Rift Zone and East Pacific Rise. This species phylogenetic placement, based only on the COI gene, is somewhat obscured and awaits further phylogenetic analysis with a wider array of nuclear and mitochondrial genes. Another interesting taxonomic group are the cnidarian fauna of the ELSC. The Cnidaria have not been reported to make up a significant portion of the community at vents in the Pacific and Atlantic Oceans. Eight species from five biogeographic provinces have been described. Only recently have they garnered attention as dense communities of anemones been observed at Central Indian Ridge vents (Van Dover et al. 2001). Our recent expeditions to the ELSC have discovered another densely populated community of mixed anemones and zoanthids. With colleagues from the Ohio State University, I am describing seven new species of anemone and one new species of zoanthid. The zoanthid and four of the anemone species live within the influence of hydrothermal vent flow. An additional species is found both near vents and in the ambient deep sea community. The remaining 2 anemone species are found in the ambient deep sea community only. The proximity of these cnidarians to vent effluent suggests a link to chemoautotrophic primary production. The additions of these new species of shrimp and cnidarians from ELSC fills gaps in the western Pacific back-arc basins that aid in our understanding of the biogeography of hydrothermal vent fauna.

An additional study I have undertaken is a stable isotope bioassay for primary production of particulate organic matter (POM) at methane seeps in the Gulf of Mexico using filter-feeding taxa. Previous studies have focused on primary production from the standpoint of the chemoautotrophic symbioses or free-living bacteria found in and on top of the sediment at seeps. Little attention has been given to the role of seeps in creating POM that enters the water column, despite the observations of suspension-feeding invertebrates at and near seep communities (i.e. tubeworm aggregations, mussel beds). Since filter-feeders directly uptake the POM in the water column, their tissue stable isotope values are point estimates of the available POM at that time. Stable carbon, nitrogen and sulfur isotope ratios for methanotrophy at seeps are distinct from photosynthetic-derived nutrients that fall down from surface water. We can exploit this difference in food source “signatures” to approximate the input of seep-derived primary production of POM relative to photosynthetic primary production of POM. I used a 2 end-member stable isotope mixing model to approximate the relative contribution of seep-derived nutrients to the POM pool at a methane seeps. Interestingly, about ¼ of the POM can be attributed to methane seep primary production of POM. This is my first chapter, so it will comprise the next edition of Dissertation Blogging!

**Photographic images are copyright C.R. Fisher/Ridge2000 Program**

Literature Cited

Bergquist DC, Eckner JT, Urcuyo IA, Cordes EE, Hourdez S, Macko SA, Fisher CR (2007) Using stable isotopes and quantitative community characteristics to determine a local hydrothermal vent food web. Marine Ecology Progress Series 330:49-65

Bruno JF, Bertness MD (2001) Habitat modification and facilitation in benthic marine communities. In: Bertness MD, Steven D. Gaines, Mark E. Hay (ed) Marine Community Ecology. Sinauer Associates, Inc., Sunderland, MA, p 201-218


Bruno JF, Stachowicz JJ, Bertness MD (2003) Inclusion of facilitation into ecological theory. TREE 18:119-125


Childress JJ, Fisher CR (1992) The biology of hydrothermal vent animals: physiology, biochemistry and autotrophic symbioses. Oceanography and Marine Biology: An Annual Review 30:337-441


Dayton PK (1972) Toward an understanding of community resilience and the potential effects of enrichments to the benthos at McMurdo Sound. In: Proceedings of the Colloquium on Conservation Problems in Antarctica, p 81-96


Fisher CR, Childress JJ, Macko SA, Brooks JM (1994) Nutritional interactions in Galapagos Rift hydrothermal vent communities: inferences from stable carbon and nitrogen isotope analyses. Marine Ecology Progress Series 103:45-55


Govenar B, Fisher CR (2007) Experimental evidence of habitat provision by aggregations of Riftia pachyptila at hydrothermal vents on the East Pacific Rise. Marine Ecology 28:3-14


Jannasch HW (1985) The chemosynthetic support of life and the microbial diversity at deep-sea hydrothermal vents. Proceedings of the Royal Society of London B 225:277-297


Johnson KS, Childress JJ, Beehler CL, Sakamoto CM (1994) Biogeochemistry of hydrothermal vent mussel communities: the deep-sea analogue to the intertidal zone. Deep-Sea Research I 41:993-1011


Johnson KS, Childress JJ, Hessler RR, Sakamoto-Arnold CM, Beehler CL (1988) Chemical and biological interactions in the Rose Garden hydrothermal vent field, Galapagos spreading center. Deep Sea Research Part A Oceanographic Research Papers 35:1723-1744


Shank TM, Fornari DJ, Von Damm KL, Lilley MD, Haymon RM, Lutz RA (1998) Temporal and spatial patterns of biological community development at nascent deep-sea hydrothermal vents (9deg.50'N, East Pacific Rise). Deep-Sea Research II 45:465-515


Tunnicliffe V (1991) The biology of hydrothermal vents: ecology and evolution. Oceanography and Marine Biology: An Annual Review 29:319-407


Van Dover CL, Fry B (1989) Stable isotopic compositions of hydrothermal vent organisms. Marine Biology 102:257-263


Van Dover CL, Fry B (1994) Microorganisms as food resources at deep-sea hydrothermal vents. Limnology and Oceanography 39:51-57


Van Dover CL, Humphris SE, Fornari D, Cavanaugh CM, Collier R, Goffredi SK, Hashimoto J, Lilley MD, Reysenbach AL, Shank TM, Von Damm KL, Banta A, Gallant RM, Götz D, Green D, Hall J, Harmer TL, Hurtado LA, Johnson P, McKiness ZP, Meredith C, Olson E, Pan IL, Turnipseed M, Won Y, Young III CR, Vrijenhoek RC (2001) Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science 294:818-823

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*This post was updated on Nov. 30 after I made substantial changes to my thesis proposal after reading comments from my advisor.

Saturday, June 30, 2007

Seabird Diet Switched From Fish to Invertebrates, Possibly Linked to Overfishing

Seabird Diet History Revealed Through Analyisis Of Museum Samples

Using feathers from museum collections all over the world, a University of Guelph integrative biology professor has tested a new hypothesis about what led to population decline of a species of seabirds in Canada.

Prof. Ryan Norris conducted a historical analysis of museum specimens of marbled murrelets going back more than a century to examine how dietary changes may have affected the seabirds’ numbers.

The study, which will be published in the August issue of Journal of Applied Ecology, also illustrates how scientists can use museum specimens to figure out what led to a species decline and to help focus conservation efforts.

“One of the biggest unknowns for endangered or threatened species is how their populations fluctuated naturally before human disturbances,” Norris said.

“But there are millions of specimens in museums across the country, many of which were collected before habitats started to decline and that can give you really important baseline information for designing plans to conserve species.”
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Norris decided to examine how marine diet over the last 100 years might have influenced the birds’ populations by analyzing the stable carbon and stable nitrogen isotopes, chemical signatures that become fixed into the marbled murrelets feathers when they’re grown.

Their isotope analysis showed that prior to 1900, the birds were feeding most on fish, but that by the 1970s, 80s and 90s, their diet consisted of marine invertebrates, which are much less energetically rich than fish.

“Murrelets have to catch around 80 to 100 marine invertebrates to get the same nutritional value as in one forage fish,” Norris said.

The researchers concluded that the seabirds’ population changes in Canada after 1950 were likely influenced by a decline in the amount of fish in their diet. It’s an important finding because it suggests that to save the species, conservation efforts should be refocused.
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